Explore all data sets below
| Species | Library type | Cells/stages profiled | Description and links |
|---|---|---|---|
| P. berghei | 10x 3' v3 & SS2 | Asexual and sexual intraerythrocytic stages |
P. berghei 10x & SS2 set2This dataset profiles ~6k cells collected over a time course of gametocyte development Regulators of male and female sexual development are critical for the transmission of a malaria parasite.Cell host & microbe 2023;31;2;305-319.e10 10.1016/j.chom.2022.12.011 Regulators of male and female sexual development critical for transmission of a malaria parasitebioRxiv 2021;2021.08.04.455056 10.1101/2021.08.04.455056 |
| P. berghei | Smart-Seq2 | Asexual and sexual intraerythrocytic stages, mosquito stages |
P. berghei SS2 set1This dataset profiles ~1800 cells examining full life cycle stages The Malaria Cell Atlas: Single parasite transcriptomes across the complete life cycle.Science 2019;365;6455 10.1126/science.aaw2619 |
| P. berghei | 10x 3'v3 | Asexual intraerythrocytic stages |
P. berghei 10x set1This dataset profiles ~5k cells across the asexual stages The Malaria Cell Atlas: Single parasite transcriptomes across the complete life cycle.Science 2019;365;6455 10.1126/science.aaw2619 |
| P. falciparum | 10x 3' v3 | Asexual and sexual intraerythrocytic stages |
P. falciparum 10x (Integrated lab strains and four natural infections)This dataset profiles ~45700 cells consisting of i) ~37600 laboratory strains collected over a time course of gametocyte development, from asexual blood stages through to stage V gametocytes, and ii) ~8000 malaria parasites collected from four Malian individuals naturally infected with multiple P. falciparum strains A single cell atlas of sexual development in Plasmodium falciparum.Science 2024;384;6695;eadj4088 10.1126/science.adj4088 |
| P. falciparum | 10x 3' v3 | Circulating asexual and sexual intraerythrocytic stages in natural infections |
P. falciparum 10x (natural infections)This dataset profiles ~8000 cells consisting of malaria parasites collected from four asymptomatic Malian individuals naturally infected with multiple P. falciparum strains A single cell atlas of sexual development in Plasmodium falciparum.Science 2024;384;6695;eadj4088 10.1126/science.adj4088 |
| P. falciparum | 10x 3' v3 | Circulating asexual and sexual intraerythrocytic stages in a natural infection |
P. falciparum 10x (natural infection)This dataset profiles ~1000 cells consisting of malaria parasites collected from an asymptomatic Malian individual naturally infected with multiple P. falciparum strains A single cell atlas of sexual development in Plasmodium falciparumbioRxiv 2023;2023.07.16.547819 10.1101/2023.07.16.547819 |
| P. falciparum | 10x 3' v3 | Asexual and sexual intraerythrocytic stages |
P. falciparum 10x (Integrated lab strains & a natural infection)This dataset profiles ~38k cells consisting of i) laboratory strains collected over a time course of gametocyte development, from asexual blood stages through to stage V gametocytes, and ii) malaria parasites collected from a Malian individual naturally infected with multiple P. falciparum strains A single cell atlas of sexual development in Plasmodium falciparumbioRxiv 2023;2023.07.16.547819 10.1101/2023.07.16.547819 |
| P. falciparum | 10x 3' v3 | Asexual and sexual intraerythrocytic stages |
P. falciparum 10x set3This dataset profiles ~30k cells collected over a time course of gametocyte development, from asexual blood stages through to stage V gametocytes A single cell atlas of sexual development in Plasmodium falciparumbioRxiv 2023;2023.07.16.547819 10.1101/2023.07.16.547819 |
| P. falciparum | 10x 3' v2 | Asexual intraerythrocytic stages |
P. falciparum 10x Competition GrowthThis dataset profiles ~8k cells across the asexual stages of 6 strains, grown together in competition and individually Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes.Nature Methods 2020;17;6;615-620 10.1038/s41592-020-0820-1 |
| P. falciparum | 10x 3' v2 & v3 | Asexual and sexual intraerythrocytic stages |
P. falciparum 10x set2This dataset profiles ~30k cells collected over a time course of gametocyte development, from asexual blood stages through to stage V gametocytes Manuscript in preparation |
| P. falciparum | Smart-Seq2 | Asexual and sexual intraerythrocytic stages, mosquito stages |
P. falciparum SS2 set1This dataset profiles ~2k cells across the full life stages Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites.eLife 2018;7 10.7554/eLife.33105 A single-cell atlas of Plasmodium falciparum transmission through the mosquito.Nature Communications 2021;12;1;3196 10.1038/s41467-021-23434-z |
| P. falciparum | 10x 3' v2 | Asexual intraerythrocytic stages |
P. falciparum 10x set1This dataset profiles ~6k cells across the asexual stages The Malaria Cell Atlas: Single parasite transcriptomes across the complete life cycle.Science 2019;365;6455 10.1126/science.aaw2619 |
| P. knowlesi | 10x 3' v2 | Asexual intraerythrocytic stages |
P. knowlesi 10x set1This dataset profiles ~6k cells across the asexual stages The Malaria Cell Atlas: Single parasite transcriptomes across the complete life cycle.Science 2019;365;6455 10.1126/science.aaw2619 |
| P. malariae | 10x 3' v3 | Circulating intraerythrocytic stages |
P. malariae Chromium 10x set1This dataset profiles ~300 cells collected from an symptomatic malaria patient, covering the circulating asexual and sexual blood stages |
| P. ovale | 10x 3' v3 | Circulating intraerythrocytic stages |
P. ovale Chromium 10x set1This dataset profiles ~5600 cells collected from two symptomatic malaria patients, covering the circulating asexual and sexual blood stages of Plasmodium ovale Manuscript in preparation |