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Malaria Cell Atlas

Plasmodium berghei Atlas

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SmartSeq2 cell view (): PCA UMAP

Prinicipal Component Analysis view of single-cell transcriptomes of Smart-seq2 dataset based on highly variable genes

UMAP visualisation of single-cell transcriptomes from across asexual and transmission stages of the parasite

SmartSeq2 gene view:

k-nearest neighbors (kNN) force-directed graph of highly variable features across cell types

Chromium 10x cell view (): PCA UMAP

Prinicipal Component Analysis view of single-cell transcriptomes of Chromium 10x dataset based on highly variable genes

UMAP visualisation of single-cell transcriptomes from across intraerythrocytic sexual and asexual stages of the parasite. For further visualisations of this dataset, click here.

Chromium 10x gene view:

cell view (): PCA UMAP

gene view: